Because cells derived from collagenase outgrowth in MESCM were smaller, compact, and cuboidal, we speculated that MESCM might have better preserved both LEPC and limbal NCs on dAM. To examine this hypothesis, double immunostaining to PCK and Vim was performed using cytospin preparations of single cells derived from the outgrowth cultured in SHEM or MESCM. The results showed that PCK−/Vim+ cells were enriched in the outgrowth cultured in MESCM (
Fig. 3A, white arrows). Cell counting analysis showed that indeed a significant higher percentage of PCK−/Vim+ cells were found in MESCM (14.8% ± 2.6%,
n = 1352) when compared with cells expanded in SHEM (0.6 ± 0.3%,
n = 1531, *
P < 0.05). Such a difference was also confirmed by qPCR, which showed significant higher expression of Vim transcript in MESCM than in SHEM (
Fig. 3B, **
P < 0.01,
n = 3). Although expression of Oct4, Nanog, and Sox2 transcripts was not significantly different between MESCM and SHEM (
Fig. 3B), that of Rex1, Nestin, and N-cad as well as such markers of angiogenesis progenitors as FLK-1, CD34, CD31, and PDGFRβ, was significantly higher in MESCM than that in SHEM (
Fig. 3C, **
P < 0.01, *
P < 0.05). In addition, expression of CXCR4, which we have reported to be expressed by limbal NCs,
12 was also significantly higher in MESCM than SHEM (
Fig. 3C, *
P < 0.05). The difference in the protein expression of Rex1, PDGFRβ, and CD34 between MESCM and SHEM was further confirmed by immunostaining (
Fig. 3C). Double immunostaining showed the presence of small PDGFRβ+/PCK− niche cells in the MESCM outgrowth but not that in the SHEM (
Fig. 3C, white arrowhead). These results collectively suggested that MESCM indeed preserved a significant number of limbal NCs expressing their characteristic markers of ESC and angiogenesis progenitors
12,13 better than SHEM on dAM.