3. Several methods currently are being developed for genome editing, including zinc-finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs), and the newly developed clustered, regularly interspaced, short palindromic repeat RNA-guided nucleases like the CRISPR/Cas9 system (Gaj, Gersbach, & Barbas,
2013). Each relies on the delivery of a gene-editing system into the affected cells using viral mediated gene therapy. All three systems function by inducing double-stranded DNA breaks at specifically targeted location in the genome. The DNA break can be repaired in a way that prevents expression of the target gene by inducing a missense or nonsense mutation (Ran et al.,
2013; Sung et al.,
2014). This strategy would completely correct the mutated gene, but is more challenging, since it involves the additional step of incorporating the template sequence. The site then can be repaired by the error-prone nonhomologous end-joining, with the intended result of a missense or nonsense mutation that will prevent expression of the targeted gene (Ran et al.,
2013; Sung et al.,
2014). Alternatively, homologous repair can be used to incorporate a template sequence to correct a genetic mutation (Ran et al.,
2013; Rouet, Smih, & Jasin,
1994).
The ZFNs, TALENs, and the CRISPR/Cas9 systems differ in the strategy they use to target the desired DNA sequence and the method used to cleave the DNA. ZFNs were the first form of directed genome editing used as a gene therapy (Urnov et al.,
2005). ZFNs target specific genetic sequences using combinations of zinc fingers, which are approximately 30 amino acids in length and target three base pairs each. By using an array of 3 to 6 zinc-fingers, the ZFN can target a sequence of 9 to 18 base pairs long and usually are used in pairs (Mani et al.,
2005; Miller et al.,
2007). The DNA break is induced by the FokI nuclease (Ramalingam et al.,
2011). ZFNs are large, difficult to design and can be difficult to target to the desired site (Kim & Kim,
2014). TALENs also use the FokI nuclease, but they use a different method to target the desired DNA sequence (Miller et al.,
2011). TALENs are made up of 33 to 35 amino acid modules that target a single nucleotide (Deng et al.,
2012). These modules can be combined to target specifically the desired location in the chromosome (Zhang et al.,
2011). TALENs are much larger than ZFNs, making them even more difficult to deliver to the target cells (Gaj et al.,
2013). Both ZFNs and TALENs depend on a coding that relates their amino acid binding sequence to a specific nucleotide sequence. The simpler code of the TALEN makes them cheaper to develop and provide a more flexible platform that can be modified to target more sites than ZFNs are capable of targeting. CRISPR is the newest form of genome editing (Yin et al.,
2014). As opposed to ZFNs and TALENs, the CRISPR/Cas9 system targets the desired DNA sequence using a guide RNA that is approximately 20 nucleotides long, making it by far the smallest and easiest to administer platform. It uses the Cas9 nuclease, which, unlike FokI, does not require dimerization to function (Jinek et al.,
2012). Furthermore, the guide RNA is relatively easy to design and inexpensive to produce (Sander & Joung,
2014). The potential for off-target binding of the guide RNA still is in question and strategies are being developed to increase the specificity (Fu et al.,
2014; Kuscu et al.,
2014).