All animals were sacrificed by CO2 inhalation followed by perfusion with phosphate-buffered saline (PBS). RCS rats were sacrificed at P90 and P120 (∼30 and 60 days after transplantation while the S334ter-4 rats were sacrificed at P90 and P150 (∼70 and 130 days after transplantation). The eyes were removed and immersion fixed in 2% paraformaldehyde for 1 hour, followed by cryopreservation in sucrose and embedding in optimum cutting temperature (OCT) compound. Horizontal sections (10 μm) were cut on a cryostat and every 10th slide was stained with cresyl violet for assessment of injection site, donor cell engraftment, and migration as well as photoreceptor preservation. Sections were immunostained with various antibodies as follows: mouse monoclonal anti-Stem101 (1:1000; Takara Bio, Kusatsu, Japan), rabbit anti-Ku80 (1:250; Abcam, Cambridge, UK), mouse anti-RPE65 (1:250; Abcam), rabbit anti-OTX1/2 (1:250; Abcam), rabbit anti-Ki67 (1:400; Abcam), rat anti-BrdU (1:250; Serotec, Kidlington, UK), mouse anti-BrdU (1:250; BD Biosciences, Billerica, MA), mouse anti-CRALBP (1:200; Abcam). Secondary antibodies used were donkey anti-mouse Alexa 488 and donkey anti-rabbit Alexa 568 (Invitrogen, Carlsbad, CA), donkey F(ab)2 anti-rat Cy3 and donkey anti-mouse Dylight 649 (Jackson Immunoresearch Laboratories, West Grove, PA), all used at 1:500 dilution. Counterstaining was achieved using DAPI (1:1000; Invitrogen). BrdU staining was the last step of any double/triple staining protocol; sections were incubated in 2M hydrochloric acid for 30 minutes at 37°C before incubation with the chosen BrdU primary antibody made in rat or mouse, depending on the staining combination (in double stainings with primary antibodies made in mouse, such as RPE65 or CRALBP, the rat BrdU was used).