All analyses were conducted in the open-source environment
R (version 3.6.3).
30 Linear mixed models
33 and likelihood ratio tests were used to evaluate the overall effect of glaucoma on first gap and last visible bundle, while accounting for repeated-measures from six ONH sectors within each eye. We tested whether the depth of these enface indices was affected by glaucoma (fixed effect), accounting for the individual eye and the ONH sector as random effects. This analysis was limited to data from individual sectors. Models took the form:
\begin{equation}\!\!\!
\begin{array}{l}y\sim1 + Disease\;{\rm{ }}Status + \left( {1|eye} \right) + \left( {1|ONH{\rm{ }}\;sector} \right) + \epsilon
\end{array}
\end{equation}
where y signifies the measure of interest (first gap or last visible bundle), 1 signifies the intercept and
ε signifies random error. A model of the same form was applied to counterpart RNFL thickness data. Post-hoc independent
t-tests were used to evaluate between-group differences in individual sectors, adjusting for multiple comparisons by Bonferroni correction. Diagnostic capability was quantified with standardized partial receiver operating characteristic area (pAUC).
34 To focus on the highest levels of specificity,
3,4 pAUCs with bootstrap 95% confidence intervals (CI) were calculated at specificity between 90% and 100%, with the trapezoid method.
35 Comparisons between pAUCs of enface indices and corresponding RNFL thickness parameters were made with the DeLong method.
36 An overall measure of the strength of correlation between depth of visible presence of RNFBs and RNFL thickness was estimated by repeated measures correlation, using the
RMcorr R package,
37 according to Bland & Altman.
38,39 This method allowed us to account for non-independence of data, and provides a measure of strength of common association among individuals (
r), interpretable as a Pearson correlation coefficient. For consistency, Pearson correlation was also used to assess the strength of individual enface-thickness relationships within each ONH sector. Correlation analyses were further explored according to disease status, testing the hypothesis that if reflectivity loss precedes thinning, correlation would be poorer in glaucoma compared to healthy eyes.