Rats were euthanized at 2 weeks and 4 weeks after implantation. After enucleating the eyes, the anterior segments were removed and the retina was carefully separated from the RPE/choroid complex. Tissues were fixed with 2% PFA in Tris-buffered saline (TBS) at 4°C overnight. The choroid was prepared for immunohistochemistry (IHC) as previously described.
32 In brief, the choroid was blocked with 2% normal donkey serum (Jackson ImmunoResearch Inc., West Grove, PA, USA) at 4°C overnight, washed in 0.1% Triton X-100 in TBS, and then incubated with a primary antibody cocktail containing: mouse anti-RPE65 (clone: 401.8B11.3D9, 1:200; Novus Biologicals, LLC, Centennial, CO, USA), and polyclonal rabbit anti-ZO-1 (1:100, cat. # 61-7300; Invitrogen/Thermo Fisher Scientific, Waltham, MA, USA) at 4°C overnight. After washing, they were incubated with a secondary antibody cocktail containing: Cy3-conjugated donkey anti-mouse (1:200; Jackson ImmunoResearch Inc.), Cy5-conjugated donkey anti-rabbit (1:200; Jackson ImmunoResearch Inc.), and DAPI (1:1000; Invitrogen, Thermo Fisher Scientific, Inc, Waltham, MA, USA) at 4°C overnight. After washing, the choroid/sclera eyecup was flattened by making four pie cuts. Ten random fields from the gel and non-gel sides of each choroid were captured at 20 times magnification using optimized z-stacks settings with Zeiss LSM880 with Airyscan (Carl Zeiss AG, Jena, Germany). Degeneration of RPE and/or loss of RPE areas were determined based on RPE65 staining only as reported previously.
21 ZO-1 antibody was used to determine the deterioration of RPE junctions. The confocal microscopic images were exported and saved as tiffs. The tiff images were exported to ImageJ software, converted into 8-bit gray color and thresholded. The dark areas lacking RPE65 staining but intact ZO-1 staining was considered as RPE degeneration, whereas complete cell loss area without RPE65 and ZO-1 staining was considered as RPE loss. To exclude the area of RPE nucleus (unstained with anti-RPE65 Ab, therefore dark) from the total dark area, particle sizes ranging from 400-infinity (pixels
2) were analyzed. The percentage of RPE loss or degeneration was averaged per choroid.