For analysis of the effect of
DUSP4 silencing on doxorubicin sensitivity, UM cell lines with constitutive activation of signaling through G-protein coupled receptors due to mutations in
GNAQ/11 coupled with high metastatic risk features were used (i.e., Mel202 [
GNAQ and
SF3B1 mutation], MP46 [
GNAQ and
BAP1 loss], MP41 [
GNA11 mutation]) and compared with the
GNAQ/11 wild-type UM cell line Mel285. The siRNA concentration and incubation time was optimized for each cell line (
Fig. 3a); 20 nM siRNA for Mel202 and MP41 and 50 nM for MP46 and Mel285 for 24 hours were chosen and drugs added at this time point for a further 24 hours.
DUSP4 remained silenced during the experimental period of 48 hours (data not shown). DUSP4 knockdown had no or minimal effect on doxorubicin sensitivity for any cell line or concentration compared with controls (
Fig. 3b). The effect of DUSP4 knockdown on proliferation after 48 hours was also examined and demonstrated that there was no significant change to proliferation rates of knockdown cells compared with controls (
Fig. 3c). DUSP4 is responsible for the dephosphorylation and inactivation of MAPK family members, including ERK. Thus, the role of DUSP4 activity on the MAPK pathway was assessed using Western blot analysis of DUSP4 knockdown in Mel202, MP46, Mel285, and MP41 UM cell lines probed with ERK1/2 and phospho-ERK antibodies. DUSP4 knockdown showed no change in expression of ERK1/2 (
Fig. 4) when compared with controls in each of the cell lines. Phospho-ERK expression was unchanged between DUSP4 knockdown and OT and RF controls in Mel202, MP46, and MP41 cell lines (
Fig. 4). This is consistent with the observation that DUSP4 knockdown did not affect sensitivity to selumetinib (
Fig. 3d). Interestingly, in the
GNAQ/11 WT cell line, Mel285, DUSP4 knockdown increased the expression of phospho-ERK. However, similar to the other three cell lines, no increase in sensitivity following DUSP4 knockdown was observed (
Fig. 3d).