After the measurements of biomechanical properties were completed, the donor corneas were fixed in 4% paraformaldehyde (Merck KGaA, Darmstadt, Germany) and 0.1% glutaraldehyde (Sigma-Aldrich Chemie GmbH, Taufkirchen, Germany) buffered in 0.1 M phosphate buffered saline (PBS) with pH 7.4 at 8°C for at least 24 hours. The corneas were then routinely processed for paraffin embedding, cut in thin (1-2 µm) sections with a sliding microtome (Reichert-Jung HN 40, Cambridge Instruments GmbH, Nussloch, Germany), and placed on Super Frost Plus microscope slides (Menzel GmbH, Braunschweig, Germany). Sections were de-paraffined with xylene (Merck), hydrated through a descending series of ethanol, and washed twice with 0.1 M PBS. In order to unmask antigens and epitopes, paraformaldehyde-fixed sections were incubated with 0.1% pepsin (Sigma-Aldrich) in 0.1 M PBS for 60 minutes and washed twice with 0.1 M PBS. To suppress nonspecific binding of IgG, specimens were incubated with normal donkey blocking serum (Dianova, Hamburg, Germany) dissolved in incubation buffer at a dilution of 1:20 for 3 hours, and washed 3 times with incubation buffer. Incubation buffer consisted of 0.1 M PBS, 0.5% bovine serum albumin (BSA; Sigma-Aldrich), 0.1% Triton-X (Sigma-Aldrich), and 0.1% sodium acid (Merck) and was used for all the following dilutions, as a wash buffer between the next steps and as a negative control. The sections were incubated overnight (18–20 hours) with primary antibodies at a dilution of 1:10, washed 3 times, and were incubated for 1 hour with fluorochrome-conjugated secondary antibodies at a dilution of 1:100 in a dark humid chamber. All chemical reactions occurred in a humid chamber at room temperature.
A rabbit polyclonal antibody against MMP-3 (sc-6839-R; Santa Cruz Biotechnology, Heidelberg, Germany) and a mouse monoclonal antibody against MMP-9 (sc-21733; Santa Cruz Biotechnology) were used as primary antibodies. The secondary antibodies were a polyclonal Cy3-conjugated donkey-anti-mouse antibody (715-165-150; Dianova) and a polyclonal Cy2-conjugated donkey-anti-rabbit antibody (711-225-152; Dianova).
After washing 4 times with incubation buffer and 3 times with 0.1 M PBS, the slides were covered with DAPI-Mounting-Medium (Dianova) and stored in darkness at 8°C. As a negative control, the respective primary antibody was omitted from the staining sequence. The histological morphology of the samples was assessed in hematoxylin and eosin (H&E)- and periodic acid Schiff (PAS)-staining sections.