Sixteen weeks after NaIO3 injection, mice were euthanized by CO2 asphyxiation followed by cervical dislocation. Their eyes were enucleated while preserving the third eyelid and placed in a solution of 2% paraformaldehyde and 2% glutaraldehyde (diluted from 16% paraformaldehyde and 8% glutaraldehyde; Electron Microscopy Sciences, Hatfield, PA, USA) in 1x phosphate-buffered saline solution, and stored at 4°C. Later, the eyes were dissected to remove the cornea, iris, and lens, leaving behind the “eye cup,” which was then dehydrated through two 15-minute washes each of 75% EtOH (Decon Labs, King of Prussia, PA, USA), 95% EtOH, and 100% EtOH. The eye cups were then put in an infiltration solution (JB-4 Plus Embedding Kit; Polysciences, Warrington, PA, USA) overnight. The following day, the eyes were embedded using a glycol methacrylate-based plastic resin embedding medium (JB-4 Plus Embedding Kit; Polysciences), ensuring orientation to encompass both superior and inferior regions in the resulting sections.
Using a rotary microtome (Leica RM2165; Leica Biosystems, Wetzlar, Germany), 3 µm sections were obtained. Sections containing both the optic nerve and an area of GA were stained with toluidine blue (Sigma-Aldrich) for 10 seconds, followed by washing with water. The slides were rinsed under running water for two minutes, then in still water for five minutes. After drying, the slides underwent a series of ethanol and xylene washes: 95% ethanol for one minute, 95% ethanol for 30 seconds, 100% ethanol for one minute, 100% ethanol for 30 seconds, xylenes (Histoprep; ThermoFisher Scientific, Waltham, MA, USA) for two minutes, and xylenes for one minute. Permount mounting medium (ThermoFisher Scientific) was applied immediately after the last xylenes wash, and a coverslip was added.
Images at magnification ×20 were captured using an Aperio ScanScope AT Turbo (Aperior, Vista, CA, USA). The images’ levels and color were adjusted in Photoshop.